花斑裸鲤红细胞发育相关基因KLF17启动子区域互作蛋白筛选

IDENTIFICATION OF PROTEINS INTERACTING WITH THE PROMOTER REGION OF KLF17 GENE IN GYMNOCYPRIS ECKLONI

  • 摘要: 为了进一步解析鱼类在高原低氧环境下的适应性进化机制, 确定相关基因KLF17是否在红细胞发育过程中发挥功能。将高原裂腹鱼亚科鱼类的代表物种——花斑裸鲤(Gymnocypris eckloni)作为实验对象, 以实验室前期花斑裸鲤全基因组测序数据为基础, 鉴定出红细胞发育相关基因KLF17启动子序列, 以其启动子DNA为诱饵, 对花斑裸鲤肾脏组织蛋白进行筛选, 采用LC-MS/MS技术对候选结合蛋白进行鉴定分析, 并进行生物信息学分析。结果表明, 在花斑裸鲤肾脏组织中共筛选到576个与KLF17启动子区域特异性结合的蛋白, 去除未能鉴定到的蛋白, 共有306个候选结合蛋白, 其中包括真核翻译起始因子2、细胞色素P450酶、转铁蛋白、含Ⅰ型血小板结合蛋白基序的解聚蛋白样金属蛋白酶、丙酮酸脱氢酶、红细胞膜蛋白带4.1蛋白等与红细胞或造血相关的蛋白GO功能富集分析表明, 这些候选结合蛋白涉及多种生物学功能, 包括参与细胞生长、细胞周期、免疫反应、信号传导、核酸与转录因子结合等过程。KEGG通路分析表明, 以上蛋白参与多条信号通路, 包括氨基酸代谢通路、细胞凋亡信号通路、PPAR信号通路、Hippo信号通路、细胞色素P450代谢信号通路、HIF-1信号通路及神经营养因子信号通路等。研究筛选出的KLF17启动子候选结合蛋白主要有参与红细胞发育相关的真核翻译起始因子2、细胞色素P450酶、转铁蛋白等, 经过功能分析发现它们参与HIF-1信号通路, 通过调控血红素、珠蛋白基因表达、铁代谢、血管生成、糖酵解等途径激发红细胞的生成与发育, 提示KLF17在转录水平上参与调控红细胞中血红素、铁和珠蛋白间的相互作用, 为红细胞分化机制研究提供重要信息。同时, 转铁蛋白作为参与铁和氧调节的交叉调控因子, 它能够促进血液中铁的运输和增强血氧的结合能力, 使得机体在低氧环境中长期生存, 这也揭示了花斑裸鲤的低氧适应机制与HIF-1下游的转铁蛋白有关。研究可对下一步验证该蛋白与KLF17的互作机制提供研究基础, 为解析高原土著鱼类造血系统发育和低氧环境适应性进化的分子机制提供科学数据。

     

    Abstract: The Qinghai-Xizang Plateau is a unique geographical unit with the highest elevation in the world and a natural laboratory for studying organism adaptation to extreme environment. Among the fundamental and abundant cell types in vertebrate life, erythrocytes play a vital role in sustaining vertebrates. Spatially and temporally coordinated regulatory networks and feedback mechanisms are essential for fish erythropoiesis and typical development. Fish species belonging to the subfamily Sohizothoraoinae, after a long period of adaptation to high temperature and low oxygen, have become one of the significant components of the present fish fauna of the Qinghai-Tibetan Plateau. In order to study the regulatory mechanism of erythrocyte development, we selected Gymnocypris eckloni, a representative species of the Sohizothoraoinae subfamily, due to its unique geographical distribution and life history responses. Based on previous research in the laboratory, the whole genome data of G. eckloni was used to identify the gene involved in erythroid development, namely KLF17, and to obtain the promoter sequence of KLF17. The KLF17 promoter DNA was used as bait to screen the total proteins from the kidney tissues of G. eckloni and identify the candidate binding proteins by LC-MS/MS. The identified candidate binding proteins of the KLF17 promoter were subjected to GO function enrichment, and KEGG pathway analysis by bioinformatics methods. The results showed that a total of 576 proteins were screened for specific binding to the KLF17 promoter region in G. eckloni kidney tissue. After removing proteins that could not be identified, there were 306 candidate binding proteins. These include eukaryotic translation initiation factor 2, cytochrome P450 enzymes, transferrin, protein-like metalloproteinases with type I platelet binding protein motifs, pyruvate dehydrogenase, erythrocyte membrane protein band 4.1 proteins, and other hematopoiesis-related proteins. Furthermore, GO functional enrichment analysis indicated that these proteins were involved in various biological functions, including cell growth, cell cycle, immune response, signaling and nucleic acid binding to transcription factors. KEGG pathway analysis showed that these proteins participated in several signaling pathways, such as amino acid metabolism pathway, apoptosis, PPAR signaling, Cytochrome P450 metabolism, HIF-1signaling, Hippo signaling and the neurotrophic factor pathway. The candidate binding proteins of the KLF17 promoter screened in this study mainly include eukaryotic translation initiation factor 2, cytochrome P450 enzymes and transferrin. Functional analyses revealed that they are involved in the HIF-1signaling pathway, which stimulates erythropoiesis and erythrocyte development through the regulation of hemoglobin and cadherin gene expression, iron metabolism, angiogenesis, glycolysis and other pathways. KLF17 is involved in regulating the interactions between haem, iron and globin proteins in erythrocytes at the transcriptional level, providing important information for studying the mechanism of erythrocyte differentiation. Meanwhile, transferrin, as a cross-regulator involved in the regulation of iron and oxygen, can promote the transport of iron in the blood and enhance the binding capacity of blood oxygen, which enables the organism to survive for a long time in a low-oxygen environment, which also shows that the mechanism of hypoxic adaptation in G. eckloni is related to transferrin downstream of HIF-1. In summary, the present study provide a solid foundation for future investigations into the interaction mechanism between this protein and KLF17. It also provide scientific data for dissecting the molecular mechanism underlying hematopoietic system development and adaptation to low-oxygen environment in native plateau fishes.

     

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