基于转录组分析的蛙虹彩病毒减毒株对大口黑鲈的免疫调控机制研究

THE IMMUNEREGULATORY MECHANISMS OF AN ATTENUATED LMBV IN MICROPTERUS SALMOIDES BASED ON TRANSCRIPTOME ANALYSIS

  • 摘要: 实验室通过连续传代致弱获得一株具有良好免疫保护效果的大口黑鲈蛙虹彩病毒减毒株(LMBV-ZJDSS-F110)。为评估该减毒株对鱼体的免疫作用, 采集了免疫后1d、4d、7d及28d的肝、脾、头肾组织样本, 进行了组织病理学和病毒载量分析, 结果发现该减毒株对鱼体组织的损伤较轻, 且病毒载量随时间推移在各组织中下降。此外, 为进一步探究该减毒株对大口黑鲈的免疫调控机制, 通过对头肾样本的转录组测序(RNA sequencing, RNA-Seq), 发现免疫早期(1d和4d)的4979和6891个差异基因主要富集于先天性免疫通路, 如细胞因子─细胞因子受体相互作用、胞质DNA感知及凋亡等通路; 免疫中后期(7d和28d)的1693和1758个差异基因则主要富集于适应性免疫通路, 如T细胞受体、B细胞受体、Fc epsilon RI信号及Th1/Th2细胞分化等通路。此外, 代谢通路中半胱氨酸和蛋氨酸代谢, 谷胱甘肽代谢通路主要在免疫前期富集, 糖酵解/糖异生代谢通路主要在免疫中后期富集。研究筛选了9个基因, 包括IRF3MXTRIM25NAMPTDHX58SRCRSAD2TMEM38C4进行RT-qPCR验证。结果显示转录组测序具有可靠性。研究为大口黑鲈的免疫应答机制提供了新见解, 并为疫苗的进一步开发与应用奠定基础。

     

    Abstract: This study aimed to investigate the immunoregulatory effects and mechanisms of an attenuated LMBV strain (LMBV-ZJDSS-F110) developed through serial passage, which exhibited strong immunoprotective properties in Micropterus salmoides. Immune responses were evaluated at the tissue and molecular levels following immunization by sampling liver, spleen, and head kidney tissues at days 1, 4, 7, and 28 post-vaccination. Histopathological analysis demonstrated the minimal tissue damage, with observable recovery by day 7 and nearly normal tissue structure by day 28, suggesting mild effects on fish tissues by the attenuated strain. Viral load assessments showed a significant reduction over time across all examined tissues, indicating effective viral clearance. To further elucidate the immune regulatory mechanisms, transcriptome analysis of head kidney samples was performed. Early in the immune response (days 1 and 4), 4979 and 6891 differentially expressed genes (DEGs) were predominantly enriched in innate immune pathways, such as cytokine-cytokine receptor interaction, cytoplasmic DNA sensing, and apoptosis pathways. This early upregulation of innate immunity likely facilitated a rapid antiviral response. During the mid-to-late immune phases (days 7 and 28), 1693 and 1758 DEGs were enriched in adaptive immune pathways, including T-cell receptor, B-cell receptor, Fc epsilon RI signaling, and Th1/Th2 cell differentiation pathways, indicating a transition from innate to adaptive immunity. Additionally, metabolic pathways involving cysteine and methionine metabolism and glutathione metabolism were enriched during the early immune phase, while glycolysis/gluconeogenesis pathways were more prominent during the mid-to-late phase. This metabolic shift may support immune cell activation and function throughout the immune response. The reliability of RNA-Seq data was verified using RT-qPCR, which showed consistent results, further confirming the accuracy of the data. The findings highlight the dynamic progression from innate to adaptive immunity and the essential role of metabolic pathways in supporting immune activity.

     

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