非洲爪蟾短型肽聚糖识别蛋白基因的克隆与鉴定

CLONING AND IDENTIFICATION OF A SHORT TYPE PEPTIDOGLYCAN RECOGNITION PROTEIN IN XENOPUS TROPICALIS

  • 摘要: 采用生物信息学方法首次对非洲爪蟾短型肽聚糖识别蛋白(xePGRP-S)基因进行了克隆,并对其在胚胎发育和成年爪蟾各组织中的表达状况进行了分析。xePGRP-ScDNA全长720bp,开放阅读框为549bp,编码182个氨基酸。序列比对显示xePGRP-S与其他物种PGRP-S的序列相似性在42.4%-50.5%之间。RT-PCR显示在非洲爪蟾胚胎发育至3d时可以明显检测到xePGRP-S的表达,之后呈持续性表达,且在所检测的心、肝、脾、肺、肾、肠和胃这7种组织器官中呈组成型表达。

     

    Abstract: A short type peptidoglycan recognition protein (PGRP-S) was first cloned from the amphibian model animal Xenopus tropicalis by using the bioinformatics method, and the expression pattern of xePGRP-S in early developing stage and normal xenopus was also analyzed. The xePGRP-S cDNA was 720 bp in length, containing a 549 bp open reading frame encoding 182 a.a. Multiple sequence alignment showed that the xePGRP-S shared 42.4%-50.5% sequence identities with other PGRP-S. RT-PCR showed that xePGRP-S mRNA was not detected in the early development stages (3-48h) until the third day. In the normal adult xenopus, xePGRP-S mRNA was constitutively expressed in all the detected tissues including heart, liver, spleen, lung, kidney, intestine and stomach.

     

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