Citation: | CAO Kai, LI Yu-Huo, HE Huan, LI Ming-Yue, FU Cui-Zhang. SPECIES DELIMITATION AND PHYLOGENETIC RELATIONSHIPS OFPSEUDOGOBIO FISHES IN THE SUBFAMILY GOBIONINAE[J]. ACTA HYDROBIOLOGICA SINICA, 2017, 41(3): 617-628. DOI: 10.7541/2017.79 |
[1] |
Bǎnǎrescu P, Nalbant T T. Pisces, Teleostei, Cyprinidae (Gobioninae) [M]. Das Tierreich, Lieferung 93, Berlin: Walter de Guryter. 1973, 1—304
|
[2] |
乐佩琦. 似逗属. 见: 陈宜瑜, 中国动物志硬骨鱼纲鲤形目(中卷). 北京: 科学出版社. 1998, 374—378
Yue P Q. Pseudogobio Bleeker, 1860 [A]. In: Chen Y Y (Eds.), Fauna Sinica, Osteichthyes, Cypriniformes (II) [C]. Beijing: Science Press. 1998, 374—378
乐佩琦. 似逗属. 见: 陈宜瑜, 中国动物志硬骨鱼纲鲤形目(中卷). 北京: 科学出版社. 1998, 374—378 |
[3] |
谢从新, 刘齐德. 似逗生物学的初步研究. 华中农业大学学报, 1986,
5(1): 73—82 http://www.cnki.com.cn/Article/CJFDTOTAL-HZNY198601012.htm
Xie C X, Liu Q D. A Preliminary study on the biology of Pseudogobio vaillanti vaillanti (Sauvage) [J]. Journal of Huazhong Agricultural University, 1986,
5(1): 73—82
谢从新, 刘齐德. 似逗生物学的初步研究. 华中农业大学学报, 1986, 5(1): 73—82 http://www.cnki.com.cn/Article/CJFDTOTAL-HZNY198601012.htm |
[4] |
Eschmeyer W N, Fricke R, Van der Laan R. Catalog of Fishes: Genera, Species, References, http://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatmain.asp
|
[5] |
罗云林, 乐佩琦, 陈宜瑜. 似逗属. 见: 伍献文, 中国鲤科鱼类志(下卷). 上海: 上海人民出版社. 1977, 512—516
Luo Y L, Yue P Q, Chen Y Y. Pseudogobio Bleeker, 1860 [A]. In: Wu X W (Eds.), Fauna of Cyprinidae in China (II) [C]. Shanghai: Shanghai People’s Publishing House. 1977, 512—516
罗云林, 乐佩琦, 陈宜瑜. 似逗属. 见: 伍献文, 中国鲤科鱼类志(下卷). 上海: 上海人民出版社. 1977, 512—516 |
[6] |
杨秀平, 张敏莹, 刘焕章. 中国似逗属鱼类的形态变异及地理分化研究. 水生生物学报, 2002,
26(3): 281—285 http://www.cnki.com.cn/Article/CJFDTOTAL-SSWX200203012.htm
Yang X P, Zhang M Y, Liu H Z. Morphological varia-tions and geographical differentiation of the genus Pseudogobio (Teleostei: Cyprinidae) in China [J]. Acta Hydrobiologica Sinica, 2002,
26(3): 281—285
杨秀平, 张敏莹, 刘焕章. 中国似逗属鱼类的形态变异及地理分化研究. 水生生物学报, 2002, 26(3): 281—285 http://www.cnki.com.cn/Article/CJFDTOTAL-SSWX200203012.htm |
[7] |
Hosoya K. Interrelationships of the Gobioninae (Cypri-nidae) [A]. In: Uyeno T, Arai T, Taniuchi T, et al. (Eds.), Indo-Pacific Fish Biology: Proceeding of the Second International Conference on Indo-Pacific Fishes [C]. Tokyo: The Ichthyological Society of Japan. 1986, 484—501
|
[8] |
俞利荣, 乐佩琦. 似逗类鱼类的系统发育研究(鲤形目: 鲤科). 动物分类学报, 1996,
21(2): 244—255 http://www.cnki.com.cn/Article/CJFDTOTAL-DWFL602.022.htm
Yu L R, Yue P Q. Studies on phylogeny of the Pseudogobiini fishes (Cypriniformes: Cyprinidae) [J]. Acta Zootaxonomica Sinica, 1996,
21(2): 244—255
俞利荣, 乐佩琦. 似逗类鱼类的系统发育研究(鲤形目: 鲤科). 动物分类学报, 1996, 21(2): 244—255 http://www.cnki.com.cn/Article/CJFDTOTAL-DWFL602.022.htm |
[9] |
Yang J Q, He S P, Freyhof J, et al. The phylogenetic relationships of the Gobioninae (Teleostei: Cyprinidae) inferred from mitochondrial cytochrome b gene sequences [J]. Hydrobiologia, 2006,
553(1): 255—266 doi: 10.1007/s10750-005-1301-3
|
[10] |
Liu H Z, Yang J Q, Tang Q Y. Estimated evolutionary tempo of East Asian gobionid fishes (Teleostei: Cyprini-dae) from mitochondrial DNA sequence data [J]. Hydrobio-logy, 2010,
55(15): 1502—1510
|
[11] |
Tang K L, Agnew M K, Chen W J, et al. Phylogeny of the gudgeons (Teleostei: Cyprinidae: Gobioninae) [J]. Molecular Phylogenetics and Evolution, 2011,
61(1): 103—124 doi: 10.1016/j.ympev.2011.05.022
|
[12] |
Jiang Z G, Zhang E. Molecular evidence for taxonomic status of the gudgeon genus Huigobio Fang, 1938 (Teleo-stei: Cypriniformes), with a description of a new species from Guangdong Province, South China [J]. Zootaxa, 2013,
3731(1): 171—182 doi: 10.11646/zootaxa.3731.1
|
[13] |
夏曦中, 张训蒲, 刘焕章. 似逗(Pseudogobio vaillanti)的分子生物地理学分析. 自然科学进展, 2005,
15(9): 1064—1069
Xia X Z, Zhang X P, Liu H Z. Molecular biological geography analysis of Pseudogobio vaillanti [J]. Progress in Natural Science, 2005,
15(9): 1064—1069
夏曦中, 张训蒲, 刘焕章. 似逗(Pseudogobio vaillanti)的分子生物地理学分析. 自然科学进展, 2005, 15(9): 1064—1069 |
[14] |
Ward R D. DNA barcode divergence among species and genera of birds and fishes [J]. Molecular Ecology Resources, 2009,
9(4): 1077—1085 doi: 10.1111/men.2009.9.issue-4
|
[15] |
郭立, 李隽, 王忠锁, et al. 基于四个线粒体基因片段的银鱼科鱼类系统发育. 水生生物学报, 2011,
35(3): 449—459 http://ssswxb.ihb.ac.cn/CN/abstract/abstract2402.shtml
Guo L, Li J, Wang Z S, et al. Phylogenetic relationships of noodle-fishes (Osmeriformes: Salangidae) based on four mitochondrial genes [J]. Acta Hydrobiologica Sinica, 2011,
35(3): 449—459
郭立, 李隽, 王忠锁, et al. 基于四个线粒体基因片段的银鱼科鱼类系统发育. 水生生物学报, 2011, 35(3): 449—459 http://ssswxb.ihb.ac.cn/CN/abstract/abstract2402.shtml |
[16] |
陈卉, Polgar G, 傅萃长, 等. 西北太平洋海岸带大弹涂鱼复合体的隐存种与进化历史. 水生生物学报, 2014,
38(1): 75—86 http://ssswxb.ihb.ac.cn/CN/abstract/abstract40.shtml
Chen H, Polgar G, Fu C Z, et al. Cryptic species and evolutionary history of Boleophthalmus pectinirostris complex along the northwestern Pacific coast [J]. Acta Hydrobiologica Sinica, 2014,
38(1): 75—86
陈卉, Polgar G, 傅萃长, 等. 西北太平洋海岸带大弹涂鱼复合体的隐存种与进化历史. 水生生物学报, 2014, 38(1): 75—86 http://ssswxb.ihb.ac.cn/CN/abstract/abstract40.shtml |
[17] |
Tominaga K, Watanabe K, Kakioka R, et al. Two highly divergent mitochondrial DNA lineages within Pseudogobio esocinus populations in central Honshu, Japan [J]. Ichthyological Research, 2009,
56(2): 195—199 doi: 10.1007/s10228-008-0071-0
|
[18] |
Tominaga K, Nakajima J, Watanabe K. Cryptic divergence and phylogeography of the pike gudgeon Pseudogobio esocinus (Teleostei: Cyprinidae): a comprehensive case of freshwater phylogeography in Japan [J]. Ichthyo-logical Research, 2016,
63(1): 79—93 doi: 10.1007/s10228-015-0478-3
|
[19] |
Hedin M. High-stakes species delimitation in eyeless cave spiders (Cicurina, Dictynidae, Araneae) from central Texas [J]. Molecular Ecology, 2015,
24(2): 346—361 doi: 10.1111/mec.13036
|
[20] |
Karanovic T, Djurakic M, Eberhard S M. Cryptic species or inadequate taxonomy? implementation of 2D geometric morphometrics based on integumental organs as landmarks for delimitation and description of copepod taxa [J]. Systematic Biology, 2016,
65(2): 304—327 doi: 10.1093/sysbio/syv088
|
[21] |
Ojanguren-Affilastro A A, Mattoni C I, Ochoa J A, et al. Phylogeny, species delimitation and convergence in the South American bothriurid scorpion genus Brachistosternus Pocock 1893: Integrating morphology, nuclear and mitochondrial DNA [J]. Molecular Phylogenetics and Evolution, 2016,
94(2016): 159—170
|
[22] |
Miller S A, Dykes D D, Polesky H F. A simple salting out procedure for extracting DNA from human nucleated cells [J]. Nucleic Acids Research, 1988,
16(3): 12—15
|
[23] |
Kim K Y, Bang I C. Molecular phylogenetic position of Abbottina springeri (Cypriniformes, Cyprindae) based on nucleotide sequences of RAG1 gene [J]. Korean Journal of Ichthyology, 2010,
22(4): 273—278
|
[24] |
Chow S, Hazama K. Universal PCR primers for S7 ribosomal protein gene introns in fish [J]. Molecular Ecology, 1998,
7(9): 1255—1256
|
[25] |
Xia X H. DAMBE5: A comprehensive software package for data analysis in molecular biology and evolution [J]. Molecular Biology and Evolution, 2013,
30(7): 1720—1728 doi: 10.1093/molbev/mst064
|
[26] |
Katoh K, Standley D M. MAFFT Multiple Sequence Alignment Software Version 7: Improvements in performance and usability [J]. Molecular Biology and Evolution, 2013,
30(4): 772—780 doi: 10.1093/molbev/mst010
|
[27] |
Tamura K, Stecher G, Peterson D, et al. MEGA6: Molecular evolutionary genetics analysis version 6.0 [J]. Molecular Biology and Evolution, 2013,
30(12): 2725—2729 doi: 10.1093/molbev/mst197
|
[28] |
Darriba D, Taboada G L, Doallo R, et al. jModelTest 2: more models, new heuristics and parallel computing [J]. Nature Methods, 2012,
9(9): 772
|
[29] |
Ronquist F, Teslenko M, Van der Mark P, et al. MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space [J]. Systematic Biology, 2012,
61(3): 539—542 doi: 10.1093/sysbio/sys029
|
[30] |
Joly S, Bruneau A. Incorporating Allelic Variation for Reconstructing the Evolutionary History of Organisms from Multiple Genes: An Example from Rosa in North America [J]. Systematic Biology, 2006,
55(4): 623—636 doi: 10.1080/10635150600863109
|
[31] |
Huson D H, Bryant D. Application of phylogenetic networks in evolutionary studies [J]. Molecular Biology and Evolution, 2006,
23(2): 254—267
|
[32] |
Huelsenbeck J P, Andolfatto P. Inference of population structure under a Dirichlet process model [J]. Genetics, 2007,
175(4): 1787—1802 doi: 10.1534/genetics.106.061317
|
[33] |
Yang Z H, Rannala B. Bayesian species delimitation using multilocus sequence data [J]. Proceedings of the National Academy of Sciences, 2010,
107(20): 9264—9269 doi: 10.1073/pnas.0913022107
|
[34] |
Yang Z H, Rannala B. Unguided species delimitation using DNA sequence data from multiple loci [J]. Molecular Biology and Evolution, 2014,
31(12): 3125—3135 doi: 10.1093/molbev/msu279
|
[35] |
Bouckaert R, Heled J, Kuhnert D, et al. BEAST 2: A software platform for bayesian evolutionary analysis [J]. PLoS Computational Biology, 2014,
10(4): 1—6
|
[36] |
Rambaut A, Drummond A. Tracer v1. 5. 2007. Available at: http://tree.bio.ed.ac.uk/software/tracer.
|
[37] |
陈宜瑜. 中国动物志硬骨鱼纲鲤形目(中卷). 北京: 科学出版社. 1998, 16—18
Chen Y Y. Fauna Sinica, Osteichthyes, Cypriniformes (II) [M]. Beijing: Science Press. 1998, 16—18
陈宜瑜. 中国动物志硬骨鱼纲鲤形目(中卷). 北京: 科学出版社. 1998, 16—18 |
[38] |
Kottelat M, Freyhof J. Handbook of European freshwater fishes [M]. Delémont: Imprimerie du Démocrate SA. 2007, 15—16
|
[39] |
Hammer Ø, Harper D A T, Ryan P D. Past: Paleontological statistics software package for education and data analysis [J]. Palaeontologia Electronica, 2001,
4(1): 9
|
[40] |
Burnaby T P. Growth-invariant discriminant functions and generalized distances [J]. Biometrics, 1966,
22(1): 96—110 doi: 10.2307/2528217
|
[41] |
Rolf F J, Bookstein F L. A comment on shearing as a method for ‘size correlation’ [J]. Systematic Zoology, 1987,
36(4): 356—367 doi: 10.2307/2413400
|
[42] |
Waters J M, Rowe D L, Burridge C P. Gene trees versus species trees: reassessing life-history evolution in a freshwater fish radiation [J]. Systematic Biology, 2010,
59(5): 504—517 doi: 10.1093/sysbio/syq031
|
[43] |
Fu C Z, Guo L, Xia R. A multilocus phylogeny of Asian noodlefishes Salangidae (Teleostei: Osmeriformes) with a revised classification of the family [J]. Molecular Phylogenetics and Evolution, 2012,
62(3): 848—855 doi: 10.1016/j.ympev.2011.11.031
|
[44] |
Xia R, Durand J D, Fu C Z. Multilocus resolution of Mugilidae phylogeny (Teleostei: Mugiliformes): Implications for the family’s taxonomy [J]. Molecular Phylogene-tics and Evolution, 2016,
96: 161—177 doi: 10.1016/j.ympev.2015.12.010
|
[45] |
Sauvage H E. Rhinogobio Vaillanti, n. sp [A]. In: Bulletin de la Societe philomathique de Paris [C]. Paris: Socie-te philomathique de Paris. 1878, 87
|